Chapter 00
This chapter ends when Pollon Takaoka remembered events which led him into this situation.
Chapter 01
This chapter begins with the first prologue movie. After that, Pollon Takaoka is on call with Cross Yumikawa, and is about to enter inside the café Incarnation.
This chapter ends with a mysterious girl with her umbrella looking at the crater where Pollon Takaoka and Momo Aizaki just fall in. The opening movie GAME OVER is played right after, then it's the second prologue movie's turn to be played.
Chapter 02
This chapter begins with Asuma Soga presenting the Earth Simulator called GAIA to the Japanese government.
This chapter ends with Tengen Ozutani and Kaoru Samezu discussing about Momo Aizaki who just eloped from the Vatican.
Chapter 03
This chapter begins with Momo Aizaki having a vision of the near future.
This chapter ends with Pollon Takaoka achieving Cicada 3301's quest to save the Flight 302, then the co-pilot says that the Third Prophecy of Fátima will be fulfilled, and that not even a certain Lúcia could stand in its way...
Chapter 04
This chapter begins with a certain flashback scene with Jacinta...
This chapter ends with the JINN revelation.
Chapter 05
This chapter begins with the JINN revelation.
This chapter ends with
Chapter 06
This chapter begins with
This chapter ends with
Chapter 07
This chapter begins with
This chapter ends with
Chapter 08
This chapter begins with
This chapter ends with
Chapter 09
This chapter begins with
This chapter ends with
Chapter 10
This chapter begins with
This chapter either ends with the World Line Collapse, either with Pollon Takaoka loading for the last time to save Momo Aizaki.
Chapter 11
This chapter begins with Pollon Takaoka who just rewrote history from the beginning using his knowledge from the future.
This chapter ends with Pollon Takaoka and Momo Aizaki reuniting after the World Line Collapse.